Preheat the oven to 350°F (175°C). Line a 12-cup muffin pan with paper liners or lightly grease the cups.
In a medium bowl, whisk together the flour, baking soda, cinnamon, nutmeg, ginger, and salt.
In a large bowl, whisk the eggs, granulated sugar, and brown sugar until combined. Add the pumpkin puree, vegetable oil, and vanilla extract and whisk until smooth.
Add the dry ingredients to the wet ingredients and gently stir until just combined. Do not overmix.
Fold the chocolate chips into the batter, reserving a small handful for topping.
Divide the batter evenly among the 12 prepared muffin cups. Sprinkle the remaining chocolate chips over the tops.
Bake for 20–24 minutes, or until a toothpick inserted into the center comes out clean or with a few moist crumbs.
Let the muffins cool in the pan for 5 minutes, then transfer them to a wire rack to cool.